Usually avquick setup solves the problem. I remember Many years ago I can remember buying my first 5 string bass. I went with another musician friend tontry out the various basses on offer.
I opted for the Fender Jazz 5 as it had the best sound, but played like a complete pig - high action, too much neck relief. However, 5 minutes once I got it home and the neck was straight, action was lowered, and the intonation reset. In fact, it's still being played (albeit by a bassist friend of mine in NYC after I gave it to him).
Wood moves, and with Fenders coming from overseas, it's inevitable that dome tweaking is required.