Filling in some of the background, when I started the revamp I considered the electronics recess on the back of the Mk 1&2 and whether I could fit in 'Treble, middle and bass' on one row and 'variable HPF, swept mid-frequency & variable LPF' in a row below.
But when I thought about it, I already have EQ on my basses, and I tend to leave the HPF set to suit the speaker, so I was able to curb my enthusiasm and go for a simpler option. - one hi-Z input stage with switched gain, followed by an 18dB/octave fixed HPF to suit the speaker, with a volume control between that and the amp. The only frills were a tuner out and a live/tune switch.
Having made that decision, I then realised that the recess I built in for the electronics would be a tight fit for two jack sockets and the circuit crammed in between them, especially since I could not use the space under the overhanging control panel supports.
To minimise the number of items on the control panel, I had to ditch the live/tune switch. The tuning jack socket is now always on, and can be used as an emergency 'DI', and you turn down the volume for silent tuning. I also opted for a combined power switch and volume control - a bit retro but it also solved another problem: the switch-off transient that blasted out from the Mk 2 is effectively muted by turning the volume down before switching off - simples.
Another problem with the Mk 1 & 2 was that the peak current drawn by the amp was enough to pull down the voltage of the battery to the point where the amp momentarily tripped out on low voltage. Fitting a bank of 10 x 1000mfd capacitors in parallel with the battery seems to cure that problem.
David